Journal list menu

Volume 55, Issue 6
Reviews
Free Access

Fluorescence spectroscopy opens new windows into dissolved organic matter dynamics in freshwater ecosystems: A review

Jason B. Fellman

Corresponding Author

School of Plant Biology, University of Western Australia, Crawley, Western Australia, Australia

Corresponding author: E-mail address: jfellman@cyllene.uwa.edu.auSearch for more papers by this author
Eran Hood

Environmental Science and Geography Program, University of Alaska Southeast, Juneau, Alaska

Search for more papers by this author
Robert G. M. Spencer

Department of Plant Sciences, University of California, Davis, California

Present address: Woods Hole Research Center, Falmouth, MassachusettsSearch for more papers by this author
First published: 05 October 2010
Citations: 527

Abstract

The biochemical composition of dissolved organic matter (DOM) strongly influences its biogeochemical role in freshwater ecosystems, yet DOM composition measurements are not routinely incorporated into ecological studies. To date, the majority of studies of freshwater ecosystems have relied on bulk analyses of dissolved organic carbon and nitrogen to obtain information about DOM cycling. The problem with this approach is that the biogeochemical significance of DOM can only partially be elucidated using bulk analyses alone because bulk measures cannot detect most carbon and nitrogen transformations. Advances in fluorescence spectroscopy provide an alternative to traditional approaches for characterizing aquatic DOM, and allow for the rapid and precise characterization of DOM necessary to more comprehensively trace DOM dynamics. It is within this context that we discuss the use of fluorescence spectroscopy to provide a novel approach to tackling a longstanding problem: understanding the dynamics and biogeochemical role of DOM. We highlight the utility of fluorescence characterization of DOM and provide examples of the potential range of applications for incorporating DOM fluorescence into ecological studies in the hope that this rapidly evolving technique will further our understanding of the biogeochemical role of DOM in freshwater ecosystems.

Number of times cited according to CrossRef: 527

  • Effects of feedstock biopolymer compositions on the physiochemical characteristics of dissolved black carbon from lignocellulose-based biochar, Science of The Total Environment, 10.1016/j.scitotenv.2020.141491, 751, (141491), (2021).
  • Direct versus indirect effects of human activities on dissolved organic matter in highly impacted lakes, Science of The Total Environment, 10.1016/j.scitotenv.2020.141839, 752, (141839), (2021).
  • Spatiotemporal variations in chromophoric dissolved organic matter (CDOM) in a mixed land-use river: Implications for surface water restoration, Journal of Environmental Management, 10.1016/j.jenvman.2020.111498, 277, (111498), (2021).
  • Throughfall and Stemflow: The Crowning Headwaters of the Aquatic Carbon Cycle, Precipitation Partitioning by Vegetation, 10.1007/978-3-030-29702-2, (121-132), (2020).
  • Rapid photodegradation of terrestrial soil dissolved organic matter (DOM) with abundant humic-like substances under simulated ultraviolet radiation, Environmental Monitoring and Assessment, 10.1007/s10661-019-7945-7, 192, 2, (2020).
  • Sediment Properties Drive Spatial Variability of Potential Methane Production and Oxidation in Small Streams, Journal of Geophysical Research: Biogeosciences, 10.1029/2019JG005213, 125, 1, (2020).
  • Impacts of redox conditions on dissolved organic matter (DOM) quality in marine sediments off the River Rhône, Western Mediterranean Sea, Geochimica et Cosmochimica Acta, 10.1016/j.gca.2020.02.001, (2020).
  • Effects of multiwalled carbon nanotubes on the dissolved organic matter released by Prorocentrum donghaiense: Results of spectroscopic studies, Ecotoxicology and Environmental Safety, 10.1016/j.ecoenv.2020.110447, 194, (110447), (2020).
  • Dynamics of dissolved organic matter and disinfection byproduct precursors along a low elevation gradient in woody wetlands - an implication of hydrologic impacts of climate change on source water quality, Water Research, 10.1016/j.watres.2020.115908, (115908), (2020).
  • In situ fluorescence measurements of dissolved organic matter: A review, Science of The Total Environment, 10.1016/j.scitotenv.2019.134361, 699, (134361), (2020).
  • Does edge erosion alter coastal wetland soil properties? A multi-method biogeochemical study, CATENA, 10.1016/j.catena.2019.104373, 187, (104373), (2020).
  • A novel PARAFAC model for continental hot springs reveals unique dissolved organic carbon compositions, Organic Geochemistry, 10.1016/j.orggeochem.2019.103964, (103964), (2020).
  • Regional-scale investigation of dissolved organic matter and lead binding in a large impacted lake with a focus on environmental risk assessment, Water Research, 10.1016/j.watres.2020.115478, (115478), (2020).
  • Nutrients release and greenhouse gas emission during decomposition of Myriophyllum aquaticum in a sediment-water system, Environmental Pollution, 10.1016/j.envpol.2020.114015, (114015), (2020).
  • Formation of calcite in the presence of dissolved organic matter: Partitioning, fabrics and fluorescence, Chemical Geology, 10.1016/j.chemgeo.2020.119492, (119492), (2020).
  • Fluorescent characteristics of dissolved organic matter released from biochar and paddy soil incorporated with biochar, RSC Advances, 10.1039/C9RA10279E, 10, 10, (5785-5793), (2020).
  • Effects of high concentrations of sulfate on dissolved organic matter in paddy soils revealed by excitation-emission matrix analyzing, Chemosphere, 10.1016/j.chemosphere.2020.126207, (126207), (2020).
  • Distribution and removal of fluorescent dissolved organic matter in 15 municipal wastewater treatment plants in China, Chemosphere, 10.1016/j.chemosphere.2020.126375, 251, (126375), (2020).
  • Fluorescence-based monitoring of anthropogenic pollutant inputs to an urban stream in Southern California, USA, Science of The Total Environment, 10.1016/j.scitotenv.2020.137206, 718, (137206), (2020).
  • Evidence for cross-polymerization between the biomass-derived furans and phenolics, Renewable Energy, 10.1016/j.renene.2020.03.030, (2020).
  • Connecting soil dissolved organic matter to soil bacterial community structure in a long-term grass-mulching apple orchard, Industrial Crops and Products, 10.1016/j.indcrop.2020.112344, 149, (112344), (2020).
  • The role of fluorescent dissolved organic matter on mercury photoreduction rates: a case study of three temperate lakes, Geochimica et Cosmochimica Acta, 10.1016/j.gca.2020.03.027, (2020).
  • Biochemical evolution of dissolved organic matter during snow metamorphism across the ablation season for a glacier on the central Tibetan Plateau, Scientific Reports, 10.1038/s41598-020-62851-w, 10, 1, (2020).
  • Two years of post-wildfire impacts on dissolved organic matter, nitrogen, and precursors of disinfection by-products in California stream waters, Water Research, 10.1016/j.watres.2020.115891, (115891), (2020).
  • Impacts of aeration and biochar addition on extracellular polymeric substances and microbial communities in constructed wetlands for low C/N wastewater treatment: Implications for clogging, Chemical Engineering Journal, 10.1016/j.cej.2020.125349, (125349), (2020).
  • Natural organic matter-enhanced transportation of iodine in groundwater in the Datong Basin: Impact of irrigation activities, Science of The Total Environment, 10.1016/j.scitotenv.2020.138460, 730, (138460), (2020).
  • Compositions and spatio-temporal distributions of different nitrogen species and lability of dissolved organic nitrogen from the Dafengjiang River to the Sanniang Bay, China, Marine Pollution Bulletin, 10.1016/j.marpolbul.2020.111205, 156, (111205), (2020).
  • Nanoparticulate zero valent iron interaction with dissolved organic matter impacts iron transformation and organic carbon stability, Environmental Science: Nano, 10.1039/D0EN00197J, (2020).
  • Time resolved data unveils the complex DOM dynamics in a Mediterranean river, Science of The Total Environment, 10.1016/j.scitotenv.2020.139212, 733, (139212), (2020).
  • Effects of land use on the characteristics and composition of fluvial chromophoric dissolved organic matter (CDOM) in the Yiluo River watershed, China, Ecological Indicators, 10.1016/j.ecolind.2020.106332, 114, (106332), (2020).
  • Fluorescence indices of dissolved organic matter as early warning signals of fish farming impacts in a large tropical reservoir, Ecological Indicators, 10.1016/j.ecolind.2020.106389, 115, (106389), (2020).
  • Factors controlling the distributions of dissolved organic matter in the East China Sea during summer, Scientific Reports, 10.1038/s41598-020-68863-w, 10, 1, (2020).
  • Bacterial community composition and function along spatiotemporal connectivity gradients in the Danube floodplain (Vienna, Austria), Aquatic Sciences, 10.1007/s00027-020-0700-x, 82, 2, (2020).
  • Characterization of water quality and fluorescence measurements of dissolved organic matter in Cabuyao river and its tributaries using excitation-emission matrix spectroscopy, Journal of Physics: Conference Series, 10.1088/1742-6596/1593/1/012033, 1593, (012033), (2020).
  • Glacier Outflow Dissolved Organic Matter as a Window Into Seasonally Changing Carbon Sources: Leverett Glacier, Greenland, Journal of Geophysical Research: Biogeosciences, 10.1029/2019JG005161, 125, 4, (2020).
  • Comparing the performance of three methods to assess DOM dynamics within two distinct glacierized watersheds of the tropical Andes, Environmental Pollution, 10.1016/j.envpol.2020.115052, 265, (115052), (2020).
  • Influence of environmental parameters on bio-optical characteristics of colored dissolved organic matter in a complex tropical coastal and estuarine region, Estuarine, Coastal and Shelf Science, 10.1016/j.ecss.2020.106864, (106864), (2020).
  • Hippopotamus are distinct from domestic livestock in their resource subsidies to and effects on aquatic ecosystems, Proceedings of the Royal Society B: Biological Sciences, 10.1098/rspb.2019.3000, 287, 1926, (20193000), (2020).
  • Variation in quantity and quality of rainwater dissolved organic matter (DOM) in a peri-urban region: Implications for the effect of seasonal patterns on DOM fates, Atmospheric Environment, 10.1016/j.atmosenv.2020.117769, (117769), (2020).
  • Seasonal dynamics of dissolved organic matter in high arsenic shallow groundwater systems, Journal of Hydrology, 10.1016/j.jhydrol.2020.125120, (125120), (2020).
  • Utilization of road dust chemical profiles for source identification and human health impact assessment, Scientific Reports, 10.1038/s41598-020-71180-x, 10, 1, (2020).
  • Dissolved organic matter characteristics in soils of tropical legume and non-legume tree plantations, Soil Biology and Biochemistry, 10.1016/j.soilbio.2020.107880, (107880), (2020).
  • Canadian permafrost stores large pools of ammonium and optically distinct dissolved organic matter, Nature Communications, 10.1038/s41467-020-18331-w, 11, 1, (2020).
  • Delineating the Continuum of Dissolved Organic Matter in Temperate River Networks, Global Biogeochemical Cycles, 10.1029/2019GB006495, 34, 8, (2020).
  • Low water treatability efficiency of wildfire-induced dissolved organic matter and disinfection by-product precursors, Water Research, 10.1016/j.watres.2020.116111, (116111), (2020).
  • H2O2-assisted photocatalysis for removal of natural organic matter using nanosheet C3N4-WO3 composite under visible light and the hybrid system with ultrafiltration, Chemical Engineering Journal, 10.1016/j.cej.2020.125733, (125733), (2020).
  • Tryptophan-like and humic-like fluorophores are extracellular in groundwater: implications as real-time faecal indicators, Scientific Reports, 10.1038/s41598-020-72258-2, 10, 1, (2020).
  • Effect of prescribed fires on the export of dissolved organic matter, precursors of disinfection by-products, and water treatability, Water Research, 10.1016/j.watres.2020.116385, 187, (116385), (2020).
  • In-situ fluorescence spectroscopy indicates total bacterial abundance and dissolved organic carbon, Science of The Total Environment, 10.1016/j.scitotenv.2020.139419, 738, (139419), (2020).
  • Hydrocarbons to Carboxyl-Rich Alicyclic Molecules: A Continuum Model to Describe Biodegradation of Petroleum-Derived Dissolved Organic Matter in Contaminated Groundwater Plumes, Journal of Hazardous Materials, 10.1016/j.jhazmat.2020.123998, (123998), (2020).
  • Macrophytes and groundwater drive extremely high organic carbon concentration of soda pans, Freshwater Biology, 10.1111/fwb.13521, 65, 9, (1555-1568), (2020).
  • Spectroscopic and molecular-level characteristics of dissolved organic matter in the Pearl River Estuary, South China, Science of The Total Environment, 10.1016/j.scitotenv.2019.136307, 710, (136307), (2020).
  • Monosaccharide composition of primary cell wall polysaccharides as a developmental level indicator of biological soil crusts, CATENA, 10.1016/j.catena.2020.104782, 195, (104782), (2020).
  • Bioavailability and compositional changes of dissolved organic matter in urban headwaters, Aquatic Sciences, 10.1007/s00027-020-00739-7, 82, 4, (2020).
  • Reciprocal interference of clay minerals and nanoparticulate zero-valent iron on their interfacial interaction with dissolved organic matter, Science of The Total Environment, 10.1016/j.scitotenv.2020.140372, 739, (140372), (2020).
  • Comparing optical versus chromatographic descriptors of dissolved organic matter (DOM) for tracking the non-point sources in rural watersheds, Ecological Indicators, 10.1016/j.ecolind.2020.106682, 117, (106682), (2020).
  • Application of asymmetric flow field-flow fractionation to the study of aquatic systems: Coupled methods, challenges, and future needs, Journal of Chromatography A, 10.1016/j.chroma.2020.461600, (461600), (2020).
  • Long-term biochar addition alters the characteristics but not the chlorine reactivity of soil-derived dissolved organic matter, Water Research, 10.1016/j.watres.2020.116260, (116260), (2020).
  • Effect of UV254 Disinfection on the Photoformation of Reactive Species from Effluent Organic Matter of Wastewater Treatment Plant, Water Research, 10.1016/j.watres.2020.116301, (116301), (2020).
  • Impact of Contrasted Weather Conditions on CDOM Absorption/Fluorescence and Biogeochemistry in the Eastern Lagoon of New Caledonia, Frontiers in Earth Science, 10.3389/feart.2020.00054, 8, (2020).
  • Release of dissolved organic matter (DOM) in an autotrophic and productive stream in Pampean region, Hydrobiologia, 10.1007/s10750-020-04253-7, (2020).
  • Influence of Dissolved Organic Matter Sources on In-Stream Net Dissolved Organic Carbon Uptake in a Mediterranean Stream, Water, 10.3390/w12061722, 12, 6, (1722), (2020).
  • Molecular dynamics of foliar litter and dissolved organic matter during the decomposition process, Biogeochemistry, 10.1007/s10533-020-00684-5, (2020).
  • Dissolved Metal(loid) Concentrations and Their Relations with Chromophoric and Fluorescent Dissolved Organic Matter in an Urban River in Shenzhen, South China, Water, 10.3390/w12010281, 12, 1, (281), (2020).
  • Organic Matter Integration, Overprinting, and the Relative Fraction of Optically Active Organic Carbon in a Human-Impacted Watershed, Frontiers in Earth Science, 10.3389/feart.2020.00067, 8, (2020).
  • Chemodiversity of soil dissolved organic matter, Environmental Science & Technology, 10.1021/acs.est.0c01136, (2020).
  • Field Tracer Tests to Evaluate Transport Properties of Tryptophan and Humic Acid in Karst, Groundwater, 10.1111/gwat.13015, 0, 0, (2020).
  • Chromophoric Dissolved Organic Matter as a Tracer of Fecal Contamination for Bathing Water Quality Monitoring in the Northern Tyrrhenian Sea (Latium, Italy), Journal of Marine Science and Engineering, 10.3390/jmse8060430, 8, 6, (430), (2020).
  • Quality of Dissolved Organic Matter Driven by Autotrophic and Heterotrophic Microbial Processes in a Large River, Water, 10.3390/w12061577, 12, 6, (1577), (2020).
  • Photochemically Induced Changes of Dissolved Organic Matter in a Humic-Rich and Forested Stream, Water, 10.3390/w12020331, 12, 2, (331), (2020).
  • Short-Term Effects of Fertilization on Dissolved Organic Matter in Soil Leachate, Water, 10.3390/w12061617, 12, 6, (1617), (2020).
  • Dissolved organic matter composition and reactivity in Lake Victoria, the world’s largest tropical lake, Biogeochemistry, 10.1007/s10533-020-00687-2, (2020).
  • High Anthropogenic Organic Matter Inputs during a Festival Increase River Heterotrophy and Refractory Carbon Load, Environmental Science & Technology, 10.1021/acs.est.0c02259, (2020).
  • Tracking down carbon inputs underground from an arid zone Australian calcrete, PLOS ONE, 10.1371/journal.pone.0237730, 15, 8, (e0237730), (2020).
  • Sub-annual fluorescence measurements of coral skeleton: relationship between skeletal luminescence and terrestrial humic-like substances, Coral Reefs, 10.1007/s00338-020-01959-x, (2020).
  • Effects of Prescribed Burn on Nutrient and Dissolved Organic Matter Characteristics in Peatland Shallow Groundwater, Fire, 10.3390/fire3030053, 3, 3, (53), (2020).
  • Sources and selective preservation of organic matter in the karst watershed: evidence from sediment records in a plateau deep lake, Southwestern China, Environmental Science and Pollution Research, 10.1007/s11356-020-10818-9, (2020).
  • Fundamental drivers of dissolved organic matter composition across an Arctic effective precipitation gradient, Limnology and Oceanography, 10.1002/lno.11385, 65, 6, (1217-1234), (2019).
  • Dynamic changes in dissolved organic matter composition in a Mountain Lake under ice cover and relationships to changes in nutrient cycling and phytoplankton community composition, Aquatic Sciences, 10.1007/s00027-019-0687-3, 82, 1, (2019).
  • Think global, act local: The small‐scale environment mainly influences microbial community development and function in lake sediment, Limnology and Oceanography, 10.1002/lno.11370, 65, S1, (S88-S100), (2019).
  • Land use strongly influences soil organic carbon and bacterial community export in runoff in tropical uplands‐, Land Degradation & Development, 10.1002/ldr.3433, 31, 1, (118-132), (2019).
  • Organic matter distribution, composition and its possible fate in the Chilean North-Patagonian estuarine system, Science of The Total Environment, 10.1016/j.scitotenv.2018.11.445, 657, (1419-1431), (2019).
  • River channel connectivity shifts metabolite composition and dissolved organic matter chemistry, Nature Communications, 10.1038/s41467-019-08406-8, 10, 1, (2019).
  • Molecular fractionation of dissolved organic matter on ferrihydrite: effects of dissolved cations, Environmental Chemistry, 10.1071/EN18235, 16, 2, (137), (2019).
  • Synergistic effects of urban tributary mixing on dissolved organic matter biodegradation in an impounded river system, Science of The Total Environment, 10.1016/j.scitotenv.2019.04.123, 676, (105-119), (2019).
  • Assessment of variations in dissolved organic matter in contrasting streams in the Pampas and Patagonian regions (Argentina), Marine and Freshwater Research, 10.1071/MF18156, 70, 5, (698), (2019).
  • Characterization of aquatic organic matter: Assessment, perspectives and priorities of research, Water Research, 10.1016/j.watres.2019.114908, (114908), (2019).
  • Molecular change of dissolved organic matter and patterns of bacterial activity in a stream along a land-use gradient, Water Research, 10.1016/j.watres.2019.114919, (114919), (2019).
  • Temporal controls on dissolved organic carbon biodegradation in subtropical rivers: Initial chemical composition versus stoichiometry, Science of The Total Environment, 10.1016/j.scitotenv.2018.10.220, 651, (3064-3069), (2019).
  • Impact of humic acid on the fate and toxicity of titanium dioxide nanoparticles in Tetrahymena pyriformis and zebrafish embryos , Nanoscale Advances, 10.1039/C8NA00053K, (2019).
  • Direct electricity production from subaqueous wetland sediments and banana peels using membrane-less microbial fuel cells, Industrial Crops and Products, 10.1016/j.indcrop.2018.10.070, 128, (70-79), (2019).
  • Effects of acidification on the optical properties of dissolved organic matter from high and low arsenic groundwater and surface water, Science of The Total Environment, 10.1016/j.scitotenv.2018.11.040, 653, (1326-1332), (2019).
  • Insight into indicators related to the humification and distribution of humic substances in Sphagnum and peat at different depths in the Qi Zimei Mountains, Ecological Indicators, 10.1016/j.ecolind.2018.11.031, 98, (430-441), (2019).
  • Water quality and greenhouse gas fluxes for stormwater detained in a constructed wetland, Journal of Environmental Management, 10.1016/j.jenvman.2018.10.106, 231, (1232-1240), (2019).
  • Application of Semiconductor Nanoparticles for Removal of Organic Pollutants or Dyes From Wastewater, Nanotechnology in Water and Wastewater Treatment, 10.1016/B978-0-12-813902-8.00013-7, (267-290), (2019).
  • Assessing the potential of fluorescence spectroscopy to monitor contaminants in source waters and water reuse systems, Environmental Science: Water Research & Technology, 10.1039/C8EW00472B, (2019).
  • Fluorescence spectroscopic characterisation of algal organic matter: towards improved in situ fluorometer development , Environmental Science: Water Research & Technology, 10.1039/C8EW00731D, (2019).
  • Composition of dissolved organic matter controls interactions with La and Al ions: Implications for phosphorus immobilization in eutrophic lakes, Environmental Pollution, 10.1016/j.envpol.2019.02.002, (2019).
  • The facilitative effects of shrub on induced biological soil crust development and soil properties, Applied Soil Ecology, 10.1016/j.apsoil.2019.02.010, (2019).
  • Land-based dissolved organic nitrogen dynamics and bioavailability in Jiaozhou Bay, China, Estuarine, Coastal and Shelf Science, 10.1016/j.ecss.2019.02.045, (2019).
  • See more